Matches in Nanopublications for { <http://purl.org/np/RAr5ps2M5JuQSj2nV4TTg8x2Q-1yIBaL30R1xx9vFRqyI#dataset> ?p ?o ?g. }
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- dataset type Dataset assertion.
- dataset describesWorkflow "RAjHDlPDghZzc9ZvQ3uJQNJ9Jd_KAYzZt7dk5PXKgjRyE" assertion.
- dataset description "This workflow performs differential expression analysis of RNA-seq data obtained from Oxford Nanopore long-read sequencing technology. First a transcriptome FASTA is constructed using gffread. Reads are then mapped to the transcriptome with the long-read optimized alignment tool minimap2. Next quantification is performed using salmon before normalization and differential expression analysis are conducted by PyDESeq2. The workflow can optionally analyze splice-isoforms through integrating the FLAIR workflow. Additionaly, NanoPlot is employed to analyze initial sequencing data and QualiMap is used to evaluate mapping results." assertion.
- dataset generatedAt "2026-04-16T15:51:47.211240Z" assertion.
- dataset hasConfigurationSection workflow-configuration assertion.