Matches in Nanopublications for { ?s ?p ?o <https://w3id.org/np/RAnGxpTDHemPIuRP09a8Qq55oseUT_NnzlkZdSraEM0qY/assertion>. }
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- kinetics-model type Thing assertion.
- parameter-P0 type Thing assertion.
- parameter-k-prime type Thing assertion.
- RAnGxpTDHemPIuRP09a8Qq55oseUT_NnzlkZdSraEM0qY type AIDA-Sentence assertion.
- kinetics-model comment "Model assumes fixed time t=10 min; R0 = initial RNA concentration; A = RNase A concentration" assertion.
- parameter-P0 comment "Primary parameter of interest for CoLoC-seq; determined by nonlinear curve fitting" assertion.
- parameter-k-prime comment "Fitted using Leverberg Marquardt regression; higher k' indicates faster degradation" assertion.
- kinetics-model description "Mathematical model describing RNA degradation dynamics using enzymatic kinetics" assertion.
- parameter-P0 description "Proportion of RNA protected from RNase digestion by organellar membranes" assertion.
- parameter-k-prime description "Pseudo-first-order rate constant for RNA degradation by RNase" assertion.
- RAnGxpTDHemPIuRP09a8Qq55oseUT_NnzlkZdSraEM0qY text "The CoLoC-seq kinetics model uses the protected pool parameter P0 to distinguish genuinely localised organellar transcripts from surface-attached contaminants based on their degradation dynamics." assertion.
- kinetics-model SIO_000211 "P0" assertion.
- kinetics-model SIO_000211 "k'i" assertion.
- kinetics-model formula "f(A) = (1 - P0) * exp(-k'i * A) + P0" assertion.
- RAnGxpTDHemPIuRP09a8Qq55oseUT_NnzlkZdSraEM0qY relatesTo RA_C-L7pLBKSyHDhS2YIFmqfb_-BLGOldcUb8emWvRltA assertion.
- parameter-P0 interpretation "0 < P0 < 1: partially protected" assertion.
- parameter-P0 interpretation "P0 = 0: entirely accessible contaminant" assertion.
- parameter-P0 interpretation "P0 ≈ 1: fully protected resident RNA" assertion.
- parameter-k-prime interpretation "Reflects sensitivity of each transcript to RNase degradation" assertion.
- parameter-P0 range "0 to 1 (0% to 100%)" assertion.
- parameter-k-prime unit "per μg/ml RNase A" assertion.
- RAnGxpTDHemPIuRP09a8Qq55oseUT_NnzlkZdSraEM0qY about gkac1205 assertion.
- kinetics-model name "CoLoC-seq Kinetics Model" assertion.
- parameter-P0 name "Protected Pool Parameter (P0)" assertion.
- parameter-k-prime name "Digestion Rate Constant (k'i)" assertion.