Nanopublications

Matches in Nanopublications for { ?s ?p ?o <https://w3id.org/np/RAfthV06gC8oUEZ5vsJEZddH2pP8RFST-PZU3cog_Rxac/assertion>. }

Showing items 1 to 72 of 72 with 100 items per page.

f1000research.54159.1 type Article assertion.
author-list _1 0000-0003-1953-5606 assertion.
author-list _2 0000-0002-5865-8994 assertion.
author-list _3 0000-0001-6666-1520 assertion.
author-list _4 0000-0002-9708-6722 assertion.
author-list _5 0000-0003-4647-3877 assertion.
0000-0002-1267-0234 name "Tobias Kuhn" assertion.
0000-0002-9984-2720 name "Robin A. Richardson" assertion.
0000-0001-9842-9718 name "Stian Soiland-Reyes" assertion.
0000-0002-0309-604X name "Salvador Capella-Gutierrez" assertion.
0000-0002-2961-9670 name "Michael R. Crusoe" assertion.
0000-0002-7552-1009 name "Hervé Ménager" assertion.
0000-0003-0183-6910 name "Paul Groth" assertion.
0000-0003-1219-2137 name "Carole Goble" assertion.
0000-0001-8465-8341 name "Yolanda Gil" assertion.
0000-0001-6666-1520 name "Jon Ison" assertion.
0000-0001-6801-2559 name "Timothy J. Griffin" assertion.
0000-0001-6811-9196 name "Alireza Khanteymoori" assertion.
0000-0001-9727-2544 name "Hans Ienasescu" assertion.
0000-0002-0097-1056 name "Vedran Kasalica" assertion.
0000-0002-1509-4981 name "Matúš Kalaš" assertion.
0000-0002-2196-0305 name "Ilkay Altintas" assertion.
0000-0002-5865-8994 name "Magnus Palmblad" assertion.
0000-0002-6038-9025 name "Robert Stevens" assertion.
0000-0002-6899-4262 name "Paulos Charonyktakis" assertion.
0000-0002-7187-4683 name "Steffen Möller" assertion.
0000-0002-9370-4677 name "Vincent Robert" assertion.
0000-0002-9609-9505 name "Suzan Verberne" assertion.
0000-0002-9708-6722 name "Veit Schwämmle" assertion.
0000-0003-0373-9372 name "Aswin Verhoeven" assertion.
0000-0003-0984-0973 name "Pratik Jagtap" assertion.
0000-0003-1781-5508 name "Hailiang Mei" assertion.
0000-0003-1953-5606 name "Anna-Lena Lamprecht" assertion.
0000-0003-4004-6479 name "Christopher J. O. Baker" assertion.
0000-0003-4647-3877 name "Mohammad Sadnan Al Manir" assertion.
ammar-ben-hadj-amor name "Ammar Ben Hadj Amor" assertion.
szoke-szaniszlo name "Szoke Szaniszlo" assertion.
0000-0002-1279-5133 name "Katherine Wolstencroft" assertion.
f1000research.54159.1 title "Perspectives on automated composition of workflows in the life sciences" assertion.
2046-1402 title "F1000Research" assertion.
f1000research.54159.1 date "2021-09-07" assertion.
author-list _10 0000-0002-6899-4262 assertion.
author-list _6 0000-0002-2196-0305 assertion.
author-list _7 0000-0003-4004-6479 assertion.
author-list _8 ammar-ben-hadj-amor assertion.
author-list _9 0000-0002-0309-604X assertion.
f1000research.54159.1 isPartOf 2046-1402 assertion.
f1000research.54159.1 abstract "Scientific data analyses often combine several computational tools in automated pipelines, or workflows. Thousands of such workflows have been used in the life sciences, though their composition has remained a cumbersome manual process due to a lack of standards for annotation, assembly, and implementation. Recent technological advances have returned the long-standing vision of automated workflow composition into focus. This article summarizes a recent Lorentz Center workshop dedicated to automated composition of workflows in the life sciences. We survey previous initiatives to automate the composition process, and discuss the current state of the art and future perspectives. We start by drawing the “big picture” of the scientific workflow development life cycle, before surveying and discussing current methods, technologies and practices for semantic domain modelling, automation in workflow development, and workflow assessment. Finally, we derive a roadmap of individual and community-based actions to work toward the vision of automated workflow development in the forthcoming years. A central outcome of the workshop is a general description of the workflow life cycle in six stages: 1) scientific question or hypothesis, 2) conceptual workflow, 3) abstract workflow, 4) concrete workflow, 5) production workflow, and 6) scientific results. The transitions between stages are facilitated by diverse tools and methods, usually incorporating domain knowledge in some form. Formal semantic domain modelling is hard and often a bottleneck for the application of semantic technologies. However, life science communities have made considerable progress here in recent years and are continuously improving, renewing interest in the application of semantic technologies for workflow exploration, composition and instantiation. Combined with systematic benchmarking with reference data and large-scale deployment of production-stage workflows, such technologies enable a more systematic process of workflow development than we know today. We believe that this can lead to more robust, reusable, and sustainable workflows in the future." assertion.
author-list _11 0000-0002-2961-9670 assertion.
f1000research.54159.1 authorList author-list assertion.
author-list _12 0000-0001-8465-8341 assertion.
author-list _13 0000-0003-1219-2137 assertion.
author-list _14 0000-0001-6801-2559 assertion.
author-list _15 0000-0003-0183-6910 assertion.
author-list _16 0000-0001-9727-2544 assertion.
author-list _17 0000-0003-0984-0973 assertion.
author-list _18 0000-0002-1509-4981 assertion.
author-list _19 0000-0002-0097-1056 assertion.
author-list _20 0000-0001-6811-9196 assertion.
author-list _21 0000-0002-1267-0234 assertion.
author-list _22 0000-0003-1781-5508 assertion.
author-list _23 0000-0002-7552-1009 assertion.
author-list _24 0000-0002-7187-4683 assertion.
author-list _25 0000-0002-9984-2720 assertion.
author-list _26 0000-0002-9370-4677 assertion.
author-list _27 0000-0001-9842-9718 assertion.
author-list _28 0000-0002-6038-9025 assertion.
author-list _29 szoke-szaniszlo assertion.
author-list _30 0000-0002-9609-9505 assertion.
author-list _31 0000-0003-0373-9372 assertion.
author-list _32 0000-0002-1279-5133 assertion.
f1000research.54159.1 pageStart "897" assertion.