Matches in Nanopublications for { ?s ?p ?o <https://w3id.org/np/RAd7ADyixVqjfKOIK7ny49jWGeR2EmgWOW4Prv3BwKbIo/assertion>. }
- 4cdb7678-4556-4b45-9bd8-05790d8e59b7 name "config.yml" assertion.
- 6d7b6733-4b86-4ace-98af-8db33f4eba06 name "create_macs2_summary.R" assertion.
- 9b9b25b1-77f6-4dac-af7e-92fa55863cea name "create_site_yaml.R" assertion.
- 2e217125-2078-43e1-a55c-b9db9862ce5a name "cross_correlations.R" assertion.
- d80380ce-e484-491a-b68b-e978fd2930c2 name "default option" assertion.
- ccf5e4c4-0c4e-48dd-8bdd-84006c60ec4b name "default setting" assertion.
- c16b77ee-3113-4dca-ab0a-e871e51008c0 name "docs" assertion.
- dfdcee9f-16ae-4a8f-bae0-4b0b69a73d53 name "electronic journal" assertion.
- 2d4cc403-0af3-4ea5-9cae-06b8e07ae93f name "fasterq-dump.py" assertion.
- 90ea7f1f-c153-4af1-8544-9f4dc0889864 name "fasterq-dump.smk" assertion.
- dd1cc899-8d02-43b3-8bf7-38de97153ed0 name "fasterq-dump.yml" assertion.
- 113a166f-2c22-4c99-a811-eb9943175d7b name "fastq.gz file" assertion.
- a0f3633c-223b-439d-99f3-2a4926996f00 name "fastqc.smk" assertion.
- 3daa2270-78fe-4674-aa82-9272af94aee1 name "fastqc.yml" assertion.
- faf7e5b3-b0ef-4e09-b55c-a745db352edf name "fold-enrichment bigwig file" assertion.
- 19242bbc-9eae-461c-9535-fff02a359034 name "footer.html" assertion.
- 7746fab3-7efa-4abf-a940-7b31e2c7fd98 name "get_frip.R" assertion.
- d29dda34-5600-44a7-80be-d89fe409e4d0 name "greylist.yml" assertion.
- 23c6fd11-d3c3-4615-8946-3c11f0876dac name "index.Rmd" assertion.
- f7b300ce-ad48-4976-9503-40223a6a9144 name "kingpin" assertion.
- 890b303b-e8c0-4c2b-b1a0-cabcdbe1e1f2 name "macs2.smk" assertion.
- 26f96889-0418-4090-92f3-3040ccf7daad name "macs2.yml" assertion.
- 98f60e6a-e6fa-4fbb-bc56-ccda2a3340e3 name "make_greylist.R" assertion.
- c4e0cdb1-351c-4fc2-8f72-55d35d80297e name "make_greylist.smk" assertion.
- 8a3c0ab0-e7e0-43b9-99b0-d199e24487c3 name "multiqc.smk" assertion.
- bceff5e5-5748-47fa-8225-46eda16071b0 name "multiqc.yml" assertion.
- 68fd58a3-bed8-4164-9bca-bc4aabe88cec name "peak_stats.smk" assertion.
- 365c007e-1313-401c-8ac1-1f681739363a name "picard_markduplicates.py" assertion.
- 5d6b0cd0-9e8e-456c-bc4d-f371f89984c3 name "picard_markduplicates.smk" assertion.
- b520ea10-64d3-4124-b441-154cd4749048 name "picard_markduplicates.yml" assertion.
- 985f7fa0-bee5-4e8d-88cc-b1aba653c3fd name "prepareChIPs:" assertion.
- 5aacd754-ef17-459c-a829-f6e0af1013f6 name "raw_qc.Rmd" assertion.
- 93bebfa3-e544-4175-9efb-7d82ea7d27bb name "references.bib" assertion.
- 672f2b4f-fac0-4518-8150-408e4469fbca name "rmarkdown.smk" assertion.
- bf76b440-5e45-49fc-bc9d-fe7b0398a545 name "rmarkdown.yml" assertion.
- a4a0093b-349f-443b-9fac-bb4a60a213bd name "rulegraph.dot" assertion.
- 5c0d3b16-c3ec-4020-8d86-927d5ed39ad4 name "rulegraph.pdf" assertion.
- b1a61304-f050-4541-9d32-259ff31f5fdc name "sample" assertion.
- a2b0640e-a918-4ddf-8f36-2021c706c9fe name "samples.tsv" assertion.
- e0e3ae31-7616-4e18-9b9c-fa616bffa161 name "samtools.smk" assertion.
- 9223fbb7-c378-4a6d-87fe-0da8b12a0404 name "samtools.yml" assertion.
- b7726c93-0c81-4159-89fb-e8d59cdc7182 name "samtools_sort.py" assertion.
- e193bcdc-d8c4-4b4e-8331-c1d46c14c206 name "single-end data" assertion.
- 52e0bc84-491c-4913-9a92-5fe4af038b25 name "treatment coverage bigwig file" assertion.
- 4ff57492-0375-4aa6-a794-2009fbbbf255 name "trimmed_qc.Rmd" assertion.
- 0fc5108a-3620-4c1b-94d3-a22e717bd424 name "### Outputs - Trimmed fastq.gz files will be written to `data/fastq/trimmed` - `FastQC` and `MultiQC` will also be run, with output in `docs/qc/trimmed` - AdapterRemoval 'settings' files will be written to `output/adapterremoval`" assertion.
- 78fbbea2-7dd0-4f4b-984d-625c6013c161 name "This index will also be used to produce the file `chrom.sizes` which is essential for conversion of bedGraph files to the more efficient bigWig files." assertion.
- 4cdb7678-4556-4b45-9bd8-05790d8e59b7 contentUrl "https://api.rohub.org/api/resources/4cdb7678-4556-4b45-9bd8-05790d8e59b7/download/" assertion.
- b7726c93-0c81-4159-89fb-e8d59cdc7182 contentUrl "https://api.rohub.org/api/resources/b7726c93-0c81-4159-89fb-e8d59cdc7182/download/" assertion.
- 985f7fa0-bee5-4e8d-88cc-b1aba653c3fd contentUrl "https://api.rohub.org/api/resources/985f7fa0-bee5-4e8d-88cc-b1aba653c3fd/download/" assertion.
- 7746fab3-7efa-4abf-a940-7b31e2c7fd98 contentUrl "https://api.rohub.org/api/resources/7746fab3-7efa-4abf-a940-7b31e2c7fd98/download/" assertion.
- 4ff57492-0375-4aa6-a794-2009fbbbf255 contentUrl "https://api.rohub.org/api/resources/4ff57492-0375-4aa6-a794-2009fbbbf255/download/" assertion.
- 23c6fd11-d3c3-4615-8946-3c11f0876dac contentUrl "https://api.rohub.org/api/resources/23c6fd11-d3c3-4615-8946-3c11f0876dac/download/" assertion.
- 3fdc0374-95f4-4c7d-928c-24dd80fbd26f contentUrl "https://api.rohub.org/api/ros/3fdc0374-95f4-4c7d-928c-24dd80fbd26f/crate/download/" assertion.
- 19242bbc-9eae-461c-9535-fff02a359034 contentUrl "https://api.rohub.org/api/resources/19242bbc-9eae-461c-9535-fff02a359034/download/" assertion.
- e0e3ae31-7616-4e18-9b9c-fa616bffa161 contentUrl "https://api.rohub.org/api/resources/e0e3ae31-7616-4e18-9b9c-fa616bffa161/download/" assertion.
- 890b303b-e8c0-4c2b-b1a0-cabcdbe1e1f2 contentUrl "https://api.rohub.org/api/resources/890b303b-e8c0-4c2b-b1a0-cabcdbe1e1f2/download/" assertion.
- 26f96889-0418-4090-92f3-3040ccf7daad contentUrl "https://api.rohub.org/api/resources/26f96889-0418-4090-92f3-3040ccf7daad/download/" assertion.
- 365c007e-1313-401c-8ac1-1f681739363a contentUrl "https://api.rohub.org/api/resources/365c007e-1313-401c-8ac1-1f681739363a/download/" assertion.
- 2d4cc403-0af3-4ea5-9cae-06b8e07ae93f contentUrl "https://api.rohub.org/api/resources/2d4cc403-0af3-4ea5-9cae-06b8e07ae93f/download/" assertion.
- b520ea10-64d3-4124-b441-154cd4749048 contentUrl "https://api.rohub.org/api/resources/b520ea10-64d3-4124-b441-154cd4749048/download/" assertion.
- a4a0093b-349f-443b-9fac-bb4a60a213bd contentUrl "https://api.rohub.org/api/resources/a4a0093b-349f-443b-9fac-bb4a60a213bd/download/" assertion.
- 6d7b6733-4b86-4ace-98af-8db33f4eba06 contentUrl "https://api.rohub.org/api/resources/6d7b6733-4b86-4ace-98af-8db33f4eba06/download/" assertion.
- a0f3633c-223b-439d-99f3-2a4926996f00 contentUrl "https://api.rohub.org/api/resources/a0f3633c-223b-439d-99f3-2a4926996f00/download/" assertion.
- 9b9b25b1-77f6-4dac-af7e-92fa55863cea contentUrl "https://api.rohub.org/api/resources/9b9b25b1-77f6-4dac-af7e-92fa55863cea/download/" assertion.
- a2b0640e-a918-4ddf-8f36-2021c706c9fe contentUrl "https://api.rohub.org/api/resources/a2b0640e-a918-4ddf-8f36-2021c706c9fe/download/" assertion.
- 9d59e482-707c-4522-87c0-c5ca05313e38 contentUrl "https://api.rohub.org/api/resources/9d59e482-707c-4522-87c0-c5ca05313e38/download/" assertion.
- 3cded656-98eb-4101-a93e-5842ba43a49e contentUrl "https://api.rohub.org/api/resources/3cded656-98eb-4101-a93e-5842ba43a49e/download/" assertion.
- 44eaf315-663c-450e-b246-b417fb1251ba contentUrl "https://api.rohub.org/api/resources/44eaf315-663c-450e-b246-b417fb1251ba/download/" assertion.
- a034a7c7-cf41-47cb-920b-f4904701712a contentUrl "https://api.rohub.org/api/resources/a034a7c7-cf41-47cb-920b-f4904701712a/download/" assertion.
- 1b909ce5-a128-47dc-93dd-4e0a1795d8c7 contentUrl "https://api.rohub.org/api/resources/1b909ce5-a128-47dc-93dd-4e0a1795d8c7/download/" assertion.
- 2699beb6-1816-4b09-a671-c7b4e8e27632 contentUrl "https://api.rohub.org/api/resources/2699beb6-1816-4b09-a671-c7b4e8e27632/download/" assertion.
- 8a3c0ab0-e7e0-43b9-99b0-d199e24487c3 contentUrl "https://api.rohub.org/api/resources/8a3c0ab0-e7e0-43b9-99b0-d199e24487c3/download/" assertion.
- 90ea7f1f-c153-4af1-8544-9f4dc0889864 contentUrl "https://api.rohub.org/api/resources/90ea7f1f-c153-4af1-8544-9f4dc0889864/download/" assertion.
- c4e0cdb1-351c-4fc2-8f72-55d35d80297e contentUrl "https://api.rohub.org/api/resources/c4e0cdb1-351c-4fc2-8f72-55d35d80297e/download/" assertion.
- 52bc888b-bb39-405f-8491-53b49d676d40 contentUrl "https://api.rohub.org/api/resources/52bc888b-bb39-405f-8491-53b49d676d40/download/" assertion.
- 68fd58a3-bed8-4164-9bca-bc4aabe88cec contentUrl "https://api.rohub.org/api/resources/68fd58a3-bed8-4164-9bca-bc4aabe88cec/download/" assertion.
- 165ceeeb-0982-40e6-a0ad-a77d0eec7316 contentUrl "https://api.rohub.org/api/resources/165ceeeb-0982-40e6-a0ad-a77d0eec7316/download/" assertion.
- 60e2708f-da85-46e8-b4a9-0907b507fd15 contentUrl "https://api.rohub.org/api/resources/60e2708f-da85-46e8-b4a9-0907b507fd15/download/" assertion.
- 5c0d3b16-c3ec-4020-8d86-927d5ed39ad4 contentUrl "https://api.rohub.org/api/resources/5c0d3b16-c3ec-4020-8d86-927d5ed39ad4/download/" assertion.
- bceff5e5-5748-47fa-8225-46eda16071b0 contentUrl "https://api.rohub.org/api/resources/bceff5e5-5748-47fa-8225-46eda16071b0/download/" assertion.
- dd1cc899-8d02-43b3-8bf7-38de97153ed0 contentUrl "https://api.rohub.org/api/resources/dd1cc899-8d02-43b3-8bf7-38de97153ed0/download/" assertion.
- 5d6b0cd0-9e8e-456c-bc4d-f371f89984c3 contentUrl "https://api.rohub.org/api/resources/5d6b0cd0-9e8e-456c-bc4d-f371f89984c3/download/" assertion.
- d29dda34-5600-44a7-80be-d89fe409e4d0 contentUrl "https://api.rohub.org/api/resources/d29dda34-5600-44a7-80be-d89fe409e4d0/download/" assertion.
- d38663ba-d7a4-4c02-981c-f14cef1ade0a contentUrl "https://api.rohub.org/api/resources/d38663ba-d7a4-4c02-981c-f14cef1ade0a/download/" assertion.
- bf76b440-5e45-49fc-bc9d-fe7b0398a545 contentUrl "https://api.rohub.org/api/resources/bf76b440-5e45-49fc-bc9d-fe7b0398a545/download/" assertion.
- 5aacd754-ef17-459c-a829-f6e0af1013f6 contentUrl "https://api.rohub.org/api/resources/5aacd754-ef17-459c-a829-f6e0af1013f6/download/" assertion.
- 17e5cc71-3d5c-46fd-8a27-709516f324bd contentUrl "https://api.rohub.org/api/resources/17e5cc71-3d5c-46fd-8a27-709516f324bd/download/" assertion.
- 03bab0c3-27a1-4bad-9192-54fd5718efb6 contentUrl "https://api.rohub.org/api/resources/03bab0c3-27a1-4bad-9192-54fd5718efb6/download/" assertion.
- 9223fbb7-c378-4a6d-87fe-0da8b12a0404 contentUrl "https://api.rohub.org/api/resources/9223fbb7-c378-4a6d-87fe-0da8b12a0404/download/" assertion.
- 2e217125-2078-43e1-a55c-b9db9862ce5a contentUrl "https://api.rohub.org/api/resources/2e217125-2078-43e1-a55c-b9db9862ce5a/download/" assertion.
- 93bebfa3-e544-4175-9efb-7d82ea7d27bb contentUrl "https://api.rohub.org/api/resources/93bebfa3-e544-4175-9efb-7d82ea7d27bb/download/" assertion.
- 99e9f2a6-a57d-4443-86af-15afee791284 contentUrl "https://api.rohub.org/api/resources/99e9f2a6-a57d-4443-86af-15afee791284/download/" assertion.
- 98f60e6a-e6fa-4fbb-bc56-ccda2a3340e3 contentUrl "https://api.rohub.org/api/resources/98f60e6a-e6fa-4fbb-bc56-ccda2a3340e3/download/" assertion.
- acfc63b3-0045-4720-80a4-8a36d26a72b4 contentUrl "https://api.rohub.org/api/resources/acfc63b3-0045-4720-80a4-8a36d26a72b4/download/" assertion.
- 3daa2270-78fe-4674-aa82-9272af94aee1 contentUrl "https://api.rohub.org/api/resources/3daa2270-78fe-4674-aa82-9272af94aee1/download/" assertion.
- 22f177c1-06e1-49bf-ade6-d3ba16e6d622 contentUrl "https://api.rohub.org/api/resources/22f177c1-06e1-49bf-ade6-d3ba16e6d622/download/" assertion.
- 672f2b4f-fac0-4518-8150-408e4469fbca contentUrl "https://api.rohub.org/api/resources/672f2b4f-fac0-4518-8150-408e4469fbca/download/" assertion.
- 3fdc0374-95f4-4c7d-928c-24dd80fbd26f creator 0000-0003-2388-0744 assertion.
- 03bab0c3-27a1-4bad-9192-54fd5718efb6 creator 0000-0003-2388-0744 assertion.